Eco-Evo-Epigen thematic school: Program
Please note: please bring a laptop with a WiFi card (no iPad-style tablets) to take advantage of bioinfo tutorials.
Monday 18/5
Morning
departure of the coach from La Rochelle Ville station at 12 noon
Arrival of participants
2:00 p.m. rapid meal
2:30 p.m. presentation of the center
Afternoon
3:00 p.m .: Historical and epistemological aspects of epigenetics Francesca Merlin (CR2, CNRS-IHPST), Antonine Nicoglou (PostDoc Labex “Who Am I?”, CRPMS & Institut Jacques Monod, IHPST), Conference / debate
5:00 p.m .: Coffee break
5.30 p.m .: Presentation of the participants, their themes and their expectations
Evening
8:00 p.m .: Presentation of the participants, their themes and their expectations (continued)
Tuesday 19/5
Morning
9h00: The epigenetic bases of phenotypic plasticity and variability Stéphane Maury (Pr. Univ Orléans), Marie Mirouze (CR2, IRD), Interactive course
11h00: Coffee break
11:30 am: Workshop on epigenetics and phenotypic plasticity and variability (part 1) : Workshops in small groups (5 groups max), one subject for each group, to be prepared for Thursday morning
Afternoon
2:00 p.m .: Molecular epigenetics techniques: which tools for which questions and which species Stéphane Maury (Pr. Univ), Marie Mirouze (CR2, IRD), Clementine Vitte (CR1, CNRS), TD
4:00 p.m .: Coffee break and discussion in small groups with the participants around the reinvestment of the day on their subject
5.30 p.m .: Presentations of NGS solutions by GATC
Evening
8:00 p.m .: Definition of epigenetics Frank Johannes (Pr. Univ of Groningen), Antonine Nicoglou (PostDoc Labex “Who Am I?”, CRPMS & Institut Jacques Monod, IHPST), round table
Wednesday 20/5
Morning
9h00: Concepts and models of heritability Frank Johannes (Pr. Univ of Groningen), Etienne Danchin (DR CNRS), Interactive course
11h00: Coffee break - Poster Session
11:30 am: Analysis and processing of data (BS-Seq, Me-DIP, ChIP-Seq) Christoph Grunau (Pr. Univ), Clémentine Vitte (CR1, CNRS), TD / TPbioinfo
Afternoon
2:00 p.m .: Tool presentations by Nimblegen / Roche via WebEx. The presentation will focus on Nimblegen sequence capture solutions and in particular on the possibilities offered by the SeqCap Epi for methylation analyzes.
2:30 p.m .: Data analysis and processing (BS-Seq, Me-DIP, ChIP-Seq) Christoph Grunau (Pr. Univ), Clémentine Vitte (CR1, CNRS), TD / TPbioinfo (continued)
4.30 p.m .: Coffee break - Poster Session
7:00 p.m .: Group photo, Aperitif
Evening
8:00 p.m .: Towards a new conception of heredity, evolutionary implications Francesca Merlin (CR2, CNRS-IHPST), Etienne Danchin (DR CNRS), Arnaud Pocheville (PostDoc, University of Sydney), round table
Thursday 21/5
Morning
9h00: Role of epigenetics in the structuring and evolution of genomes Marie Mirouze (CR2, IRD), Clémentine Vitte (CR1, CNRS), Lecture interactive
10:30 am: Coffee break - Poster Session
11h00: Workshop on epigenetics and phenotypic plasticity and variability (part 2): group work
Afternoon
2:00 p.m .: Techniques specific to repeated DNA analysis and “Non-coding” RNAs Cristina Vieira (Pr. Univ), Emmanuelle Lerat (CR1, CNRS), TD / TPbioinfo
3:30 p.m .: Coffee break - Poster Session
4:00 p.m .: Techniques specific to repeated DNA analysis and “Non-coding” RNAs Cristina Vieira (Pr. Univ), Emmanuelle Lerat (CR1, CNRS), TD / TPbioinfo (continued)
5.30 p.m .: Workshop on epigenetics and phenotypic plasticity and variability (part 3): group work
Evening
8:00 p.m .: RTP strategy (publications, actions, ...) , round table for RTP members
Friday 22/5
Morning
9:30 am Presentation of tools by Diagenode
10:00 a.m. Coffee break
10:30 am: Workshop on epigenetics and phenotypic plasticity and variability (part 4): restitution by group in 10 min each
Balance sheet
Afternoon
12:45 pm Departure of the coach for La Rochelle
Meal times: 7h00-9h00 Breakfast | 12:30 pm Lunch | 7:30 p.m. Dinner