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FieldEpiGen Thematic School

25-29 / 6/2018 - Program
Monday / Monday 25/6:

  • 10:00 - 12:00 arrival (CBETM, Bat R)

    • key reception and luggage drop

    • WiFi pass

    • campus map

  • 12:00 - 14:00 lunch - cafeteria

  • 14:00 - 17:00 Experimental and sampling strategies (E. Danchin, J. Vidal Dupiol) - lecture room BU

  • 19:00 - 20:30 Welcome reception (CBETM, Bat R)

Tuesday / Tuesday 26/6:

  • 2 parallel morning sessions: ATAC-Seq population (R. Augusto / C. Grunau / O. Rey / C. Cosseau) and
    Mobilome-seq     (M. Mirouze), please choose one for the week

    • 09:00 - 12:30 ATAC Step 1A (ATAC) and 1B (Library generation) - practical class room C113

    • 09:00 - 12:00 Mobilome Step ONT-1 / MOB-3 - practical class room C114

  • 12:30 - 14:00 lunch - cafeteria

  • 14:00 - 17:00 epiGBS (K. Verhoeven) - lecture room BU

  • 18:30 bus departure for beach dinner and round table discussion

  • 21:00 return to Perpignan

Wednesday / Wednesday 27/6:

  • 2 parallel  sessions

    • 09:00 - 11:00 ATAC Step 2A (library normalization) - Bat R CBETM

    • 09:00 - 12:00 Mobilome Step MOB-4 - practical class room C114

  • 12:30 - 14:00 lunch - cafeteria

  • 2 parallel  sessions

    • 14:00 - 16:00 ATAC Step 2B (sequencing) - Bat R CBETM, and theory of next day's analysis - seminar room CBETM

    • 14:00 - 16:00 Mobilome Step ONT-2 - practical class computer room

  • 16:30 - 18:00 alternative methods (MeDIP-Seq, RRBS, ChIPmentation) made easy (by Diagenode) - seminar room CBETM

  • 19:00 public transport to downtown Perpignan

  • 19:30 dinner downtown Perpignan, then free evening

Thursday / Thursday 28/6:

  • 2 parallel  sessions

    • 09:00 - 12:00 ATAC Step 3A (quality check) - practical class computer room

    • 09:00 - 12:00 Mobilome Step MOB-5 / MOB-6 - practical class room C114 / computer room 2

  • 12:30 - 14:00 lunch - cafeteria

  • 2 parallel  sessions

    • 14:00 - 17:00 ATAC Step 3B (peak calling) - practical class computer room

    • 14:00 - 17:00 Mobilome Step ONT-3 / MOB-6 - practical class computer room 2

  • 17:30 bus departure for Banyuls-sur-mer

  • 18:30 guided visit Biodiversarium

  • 19:30 dinner and round table discussion "Challenges in population epigenetics"

  • 22:00 return to Perpignan

Friday / Friday 29/6:

  • 09:00 - 12:00 Population epigenetics (P. David) - lecture room BU or computer room

  • 12:30 - 13:00 debriefing

  • 13:00 take away lunch and departure

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